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• Bernardi G. (2019) The Genomic Code: A Pervasive Encoding/Molding of Chromatin Structures and a Solution of the “Non‐Coding DNA” Mystery. Bioessays 41, 1900106.  https://doi.org/10.1002/bies.201900106
• Bernardi G. (2018) The formation of chromatin domains involves a primary step based on the 3-D structure of DNA. Sci Rep 8, 17821. https://doi.org/10.1038/s41598-018-35851-0
• Lamolle G, Sabbia V, Musto H, Bernardi G. (2018) The short-sequence design of DNA and its involvement in the 3-D structure of the genome. Sci Rep 8, 17820. https://doi.org/10.1038/s41598-018-35864-9
• Jabbari K, Bernardi G (2017) An Isochore Framework Underlies Chromatin Architecture. PLoS One 12(1):e0168023.
• Bernardi G. (2016) Genome Organization and Chromosome Architecture. Cold Spring Harb Symp Quant Biol 80:83-91
• Costantini M, Greif G, Alvarez-Valin F, Bernardi G (2016) The Anolis Lizard Genome: An Amniote Genome without Isochores? 8:1048-55

• Bernardi G. (2015). Chromosome Architecture and Genome Organization. PLoS ONE http://dx.doi.org/10.1371/journal.pone.0143739 (PDF)
• Cozzi P., Milanesi L., Bernardi G. (2015) Segmenting the human genome into isochores. Evol. Bioinf. 11:253-61 (PDF)

• Bernardi G., Fantini B., Dröscher A. (2014). Crossroads between nature and culture: an introduction. HPLS 36:301-304. (PDF)

• Costantini M., Alvarez-Valin F., Costantini S., Cammarano R., Bernardi G. (2013). Compositional patterns in the genomes of unicellular eukaryotes. BMC Genomics 2013, 14:755. (PDF)

• Costantini M., Auletta F., Bernardi G. (2012). The distribution of ‘new’ and ‘old’ Alu sequences in the human genome: the solution of a ‘mystery’. Gen. Biol. Evol. 29: 421-427. (PDF)

• Bernardi G. (2012). Isochores. In Encyclopedia of Life Sciences. John Wiley and Sons, Ltd., Chichester, UK. [DOI:10.1002/9780470015902.a0005003.pub2]. (PDF)

• Arhondakis S., Auletta F., Bernardi G. (2011). Isochores and the regulation of gene expression in the human genome. Gen. Biol. Evol. 3:1080-1089. (PDF)

• Clay O.K., Bernardi G. (2011). GC3 of genes can be used as a proxi for isochore base composition: a reply to Elhaik et al. Mol. Biol Evol. 28: 21-23. (PDF)