1991-2000

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  • Bernardi G. (2000b). The compositional evolution of vertebrate genomes. Gene 259: 31-43. (PDF)
  • Barakat A., Gallois P., Raynal M., Mestre-Ortega D., Sallaud C., Guiderdoni E., Delseny M., Bernardi G. (2000). The distribution of T-DNA in the genomes of transgenic Arabidopsis and rice. FEBS Letters 471: 161-164. (PDF)
  • Chiusano M.L., Alvarez-Valin F., Di Giulio M., D’Onofrio G., Ammirato G., Colonna G., Bernardi G. (2000). Second codon positions of genes and the secondary structures of proteins. Relationships and implications for the origin of the genetic code. Gene 261: 63-69. (PDF)
  • Alvarez-Valin F., Tort J.F., Bernardi G. (2000). Non-random spatial distribution of synonymous substitutions in the GP63 gene from Leishmania. Genetics 155: 1683-1692. (PDF)
  • Bernardi G., Federico C., Saccone S. (2000). The human prometaphase chromosomal bands: compositional features and gene distribution. In Chromosomes today, vol. 13 (E.Olmo and C.A. Redi, eds.) Birkhauser Verlag AG., Germany. (PDF)
  • Federico c., Andreozzi l., Saccone s., Bernardi g. (2000). Gene density in the giemsa bands of human chromosomes. chromosome res. 8: 737-746. (PDF)
  • Carels N., Bernardi G. (2000a). Two classes of genes in plants. Genetics 154: 1819-1825. (PDF)
  • Bernardi G. (2000a). Isochores and the evolutionary genomics of vertebrates. Gene 241: 3-17. (PDF)
  • Perani P., Cacciò S., Saccone S., Andreozzi L., Bernardi G. (2000). Telomeres in warm-blooded vertebrates are composed of GC-rich isochores. Biochemical Genetics 38 (7-8): 227-239. (PDF)
  • Douady C., Carels N., Clay O., Catzeflis F., Bernardi G. (2000). Diversity and phylogenetic implications of CsCl profiles from rodent DNAs. Molecular Phylogen. Evol. 17: 219-230. (PDF)
  • Jabbari K., Bernardi G. (2000). The distribution of genes in the Drosophila genome. Gene 247: 287-292. (PDF)
  • Cruveiller S., D’Onofrio G., Bernardi G. (2000). The compositional transition between the genomes of cold- and warm-blooded vertebrates: codon frequencies in orthologous genes. Gene 261: 71-83. (PDF)
  • Carels N., Bernardi G. (2000b). The compositional organization and the expression of the Arabidopsis genome. FEBS Letters 472: 302-306. (PDF)
  • de Miranda A.B., Alvarez-Valin F., Jabbari K., Degrave W.M., Bernardi G. (2000). Gene expression, amino acid conservation, and hydrophobicity are the main factors shaping codon preferences in Mycobacterium tuberculosis and Mycobacterium leprae. J. Mol. Evol. 50:45-55. (PDF)
  • Alvarez-Valin F., Jabbari K., Carels N., Bernardi G. (1999). Synonymous and nonsynonymous substitutions in genes from Gramineae: intragenic correlations. J. Mol. Evol. 49: 330-342. (PDF)
  • Sadoni N., Langer S., Fauth C., Bernardi G., Cremer T., Turner B.M., Zink D. (1999). Nuclear organization of mammalian genomes: polar chromosome territories build up functionally distinct higher order compartments. J. Cell. Biology 146: 1211-1226. (PDF)
  • Clay O., D’Onofrio G., Jabbari K., Zoubak S., Saccone S., Bernardi G. (1999). Compositional correlations and gene distribution of the human genome. In Evolutionary theory and processes: modern perspectives. Papers in honour of Eviatar Nevo (S.P. Wassered.). pp. 115-123. (PDF)
  • Chiusano M.L., D’Onofrio G., Alvarez-Valin F., Jabbari K., Colonna G., Bernardi G. (1999). Correlations of nucleotide substitution rates and base composition of mammalian coding sequences with protein structure. Gene 238: 23-31. (PDF)
  • D’Onofrio G., Jabbari K., Musto H., Alvarez-Valin F., Cruveiller S., Bernardi G. (1999). Evolutionary genomics of vertebrates and its implications. Ann. N.Y. Acad. Sci. 870: 81-94. (PDF)
  • Pesole G., Bernardi G., Saccone C. (1999). Isochore specificity of AUG initiator context of human genes. FEBS Lett. 464: 60-62. (PDF)
  • Cruveiller S., Jabbari K., D’Onofrio G., Bernardi G. (1999). Different hydrophobicities of orthologous proteins from Xenopus and human. Gene 238: 15-21. (PDF)
  • Musto H., Romero H., Zavala A., Jabbari K., Bernardi G. (1999). Synonymous codon choices in the extremely GC-poor genome of Plasmodium falciparum: compositional constraints and translational selection. J. Mol. Evol. 49: 27-35. (PDF)
  • Saccone S., Federico C., Solovei I., Croquette M.F., Della Valle G., Bernardi G. (1999). Identification of the gene-richest bands in human prometaphase chromosomes. Chromosome Research 7: 379-386. (PDF)
  • Musto H., Romero H., Zavala A., Bernardi G. (1999). Compositional correlations in the chicken genome. J. Mol. Evol. 49: 325-329. (PDF)
  • Barakat A., Han D.T., Benslimane A.A., Rode A., Bernardi G. (1999). The gene distribution in the genomes of pea, tomato and date palm. FEBS Lett. 463: 139-142. (PDF)
  • D’Onofrio G., Jabbari K., Musto H., Bernardi G. (1999). The correlation of protein hydropathy with the composition of coding sequences. Gene 238: 3-14. (PDF)
  • Glukhova L.A., Zoubak S.V., Rynditch A.V., Miller G.G., Titova I.V., Vorobyeva N., Lazurkevitch Z.V., Graphodatskii A.S., Kushch A.A., Bernardi G. (1999). Localization of HTLV-1 and HIV-1 proviral sequences in chromosomes of persistently infected cells. Chromosome Res. 7:177-183. (PDF)
  • Barakat A., Matassi G., Bernardi G. (1998). Distribution of genes in the genome of Arabidopsis thaliana and its implications for the genome organization of plants. Proc. Natl. Acad. Sci. USA 95: 10044-10049. (PDF)
  • Jabbari K. and Bernardi G. (1998). CpG doublets, CpG islands and Alu repeats in long human DNA sequences from different isochore families. Gene 224: 123-128. (PDF)
  • Carels N., Hatey P., Jabbari K., Bernardi G. (1998). Compositional properties of homologous coding sequences from plants. J. Mol. Evol. 46: 45-53. (PDF)
  • Matassi G., Labuda D., Bernardi G. (1998). Distribution of the mammalian-wide interspersed repeats (MIRs) in the isochores of the human genome. FEBS Lett. 439: 63-65. (PDF)
  • Alvarez-Valin F., Jabbari K., Bernardi G. (1998). Synonymous and nonsynonymous substitutions in mammalian genes: intragenic correlations. J. Mol. Evol. 46: 37-44. (PDF)
  • Rynditch A.V., Zoubak S., Tsyba L., Tryapitsina-Guley N., Bernardi G. (1998). The regional integration of retroviral sequences into the mosaic genomes of mammals. Gene 222: 1-16. (PDF)
  • Federico C., Saccone S., Bernardi G. (1998). The gene-richest bands of human chromosomes replicate at the onset of the S-phase. Cytogenet. Cell. Genet. 80: 83-88. (PDF)
  • D’Onofrio G., Clay O., Jabbari K., Alvarez-Valin F., Saccone S., Bernardi G. (1998). The organization of the human genome. In Frontiers in Biology: The Challenges of Biodiversity, Biotecnology and Sustainable Agriculture. (C.H. Chou and K.T. Shao, eds.), Academia Sinica, Taipei, 1998). pp. 11-17. (PDF)
  • Cacciò S., Jabbari K., Matassi G., Guermonprez F., Desgrès J., Bernardi G. (1997). Methylation patterns in the isochores of vertebrate genomes. Gene 205: 119-124. (PDF)
  • Bernardi G., Hughes S., Mouchiroud D. (1997). The major compositional transitions in the vertebrate genome. J. Mol. Evol. 44 (suppl. 1): S41-S51. (PDF)
  • Barakat A., Carels N., Bernardi G. (1997). The distribution of genes in the genomes of Gramineae. Proc. Natl. Acad. Sci. USA 94: 6857-6861. (PDF)
  • Saccone S., Cacciò S., Perani P., Andreozzi L., Rapisarda A., Motta S., Bernardi G. (1997). Compositional mapping of mouse chromosomes and identification of the gene-rich regions. Chromosome Res. 5: 293-300. (PDF)
  • Jabbari K., Cacciò S., Païs de Barros J.P., Desgrès J., Bernardi G. (1997). Evolutionary changes in CpG and methylation levels in the genome of vertebrates. Gene 205: 109-118. (PDF)
  • Bernardi G. (1997). Human genome and its evolutionary origin. In Encyclopedia of Human Biology, Second Edition (R. Dulbecco, ed.), vol. 4, pp.629-636, Academic Press, New York, USA. (PDF)
  • Musto H., Cacciò S., Rodríguez-Maseda H., Bernardi G. (1997). Compositional constraints in the extremely GC-poor genome of Plasmodium falciparum. Mem. Inst. Oswaldo Cruz, Rio de Janeiro 92: 835-841. (PDF)
  • De Sario A., Roizès G., Allegre N., Bernardi G. (1997). A compositional map of the cen-q21 region of human chromosome 21. Gene 194: 107-113. (PDF)
  • Saccone S., Cacciò S., Kusuda J., Andreozzi L., Bernardi G. (1996). Identification of the gene-richest bands in human chromosomes. Gene 174: 85-94. (PDF)
  • Bernardi G., Mouchiroud D., Gautier C. (1996). Isochores and synonymous substitutions in mammalian genes. In DNA and Protein Sequence Analysis. (M.J. Bishop and C.J. Rawlings, eds.) pp. 197-208, The Practical Approach Series. (PDF)
  • Clay O., Cacciò S., Zoubak S., Mouchiroud D., Bernardi G. (1996). Human coding and noncoding DNA: compositional correlations. Mol. Phylogenet. Evol. 5: 2-12. (PDF)
  • Bernardi G. (1996). The organization of the human genome. Chemicke listy 90: 549-553. (PDF)
  • De Sario A., Geigl E.M., Palmieri G., D’Urso M., Bernardi G. (1996). A compositional map of human chromosome band Xq28. Proc. Natl. Acad. Sci. USA 93: 1298-1302. (PDF)
  • Bernardi G. (1996) Gene distribution in the human genome. In Encyclopedia of Molecular Biology & Molecular Medicine, (R.A. Meyers, ed.), vol. 2, pp. 360-364. (PDF)
  • Zoubak S., Clay O., Bernardi G. (1996). The gene distribution of the human genome. Gene 174: 95-102. (PDF)
  • Bernardi G. (1996). Genome dynamics and the generation of biodiversity. In Biodiversity, Science & Development ( F. Di Castri and T. Younès, eds.), pp. 67-79, CAB International. (PDF)
  • De Sario A., Geigl E.M., Bernardi G. (1995). A rapid procedure for the compositional analysis of yeast artificial chromosomes. Nucleic Acids Res. 23: 4013-4014. (PDF)
  • Cacciò S., Zoubak S., D’Onofrio G., Bernardi G. (1995). Nonrandom frequency patterns of synonymous substitutions in homologous mammalian genes. J. Mol. Evol. 40: 280-292. (PDF)
  • Bernardi G. (1995). The distribution of genes in the human genome. In Gene families: structure, function, genetics and evolution – Proceedings of the VIII International Congress on Isozymes (R.S. Holmes and H.A. Lim, eds.), pp. 27-32, World Scientific Pub Singapore (PDF)
  • Bernardi G. (1995). Génome humain: ordre et nécessité. Biofutur 17-20. (PDF)
  • Musto H., Rodriguez-Maseda H., Bernardi G. (1995). Compositional properties of nuclear genes from Plasmodium falciparum. Gene 152: 127-132. (PDF)
  • Bernardi G. (1995). Gene distribution in the human genome. In Encyclopedia of Molecular Biology (R.A. Meyers, ed.), vol. 2, pp.360-364, Weinheim, Federal Republic of Germany. (PDF)
  • Zoubak S., D’Onofrio G., Cacciò S., Bernardi G., Bernardi G. (1995). Specific compositional patterns of synonymous positions in homologous mammalian genes. J. Mol. Evol. 40: 293-307. (PDF)
  • Bernardi G. (1995). The distribution of genes in the human genome. Biology International, Special issue 33. (PDF)
  • Bernardi G. (1995). The human genome: organization and evolutionary history. Annu. Rev. Genet. 29: 445-476. (PDF)
  • Carels N., Barakat A., Bernardi G. (1995). The gene distribution of the maize genome. Proc. Natl. Acad. Sci. USA 92: 11057-11060. (PDF)
  • Mouchiroud D., Gautier C., Bernardi G. (1995). Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions. J. Mol. Evol. 40: 107-113. (PDF)
  • Musto H., Rodriguez-Maseda H., Bernardi G. (1994). The nuclear genomes of African and American trypanosomes are strikingly different. Gene 141: 63-69. (PDF)
  • Gyapay G., Morissette J., Vignal A., Dib C., Fizames C., Millasseau P., Marc S., Bernardi G., Lathrop M., Weissenbach J. (1994). The 1993-94 Généthon human genetic linkage map. Nature Genetics 7: 246-249. (PDF)
  • Cacciò S., Perani P., Saccone S., Kadi F., Bernardi G. (1994). Single-copy sequence homology among the GC-richest isochores of the genomes from warm-blooded vertebrates. J. Mol. Evol. 39: 331-339. (PDF)
  • Zoubak S., Richardson J.H., Rynditch A., Höllsberg P., Hafler D.A., Boeri E., Lever A.M.L., Bernardi G. (1994). Regional specificity of HTLV-I proviral integration in the human genome. Gene 143: 155-163. (PDF)
  • Saccone S., De Sario A., Wiegant J., Raap A.K., Della Valle G., Bernardi G. (1993). Correlations between isochores and chromosomal bands in the human genome. Proc. Natl. Acad. Sci. USA 90: 11929-11933. (PDF)
  • Bernardi G., Mouchiroud D., Gautier C. (1993). Silent substitutions in mammalian genomes and their evolutionary implications. J. Mol. Evol. 37: 583-589. (PDF)
  • Isacchi A., Bernardi G., Bernardi G. (1993). Compositional compartmentalization of the nuclear genomes of Trypanosoma brucei and Trypanosoma equiperdum. FEBS Lett. 335: 181-183. (PDF)
  • Kadi F., Mouchiroud D., Sabeur G., Bernardi G. (1993). The compositional patterns of the avian genomes and their evolutionary implications. J. Mol. Evol. 37: 544-551. (PDF)
  • Bernardi G. (1993). The isochore organization of the human genome and its evolutionary history – a review. Gene 135: 57-66. (PDF)
  • Bernardi G., D’Onofrio G., Caccio’ S., Bernardi G. (1993). Molecular phylogeny of bony fishes, based on the amino acid sequence of the growth hormone. J. Mol. Evol. 37: 644-649. (PDF)
  • Pilia G., Little R.D., Aïssani B., Bernardi G., Schlessinger D. (1993). Isochores and CpG islands in YAC contigs in human Xq26.1-qter. Genomics 17: 456-462. (PDF)
  • Mouchiroud D., Bernardi G. (1993). Compositional properties of coding sequences and mammalian phylogeny. J. Mol. Evol. 37: 109-116. (PDF)
  • Sabeur G., Macaya G., Kadi F., Bernardi G. (1993). The isochore patterns of mammalian genomes and their phylogenetic implications. J. Mol. Evol. 37: 93-108. (PDF)
  • Bernardi G. (1993c). Genome organization and species formation in vertebrates. J. Mol. Evol. 37: 331-337. (PDF)
  • Bernardi G. (1993b). The vertebrate genome: isochores and chromosomal bands. In Chromosomes Today, vol. 11 (A.T. Sumner and A. Chandley, eds.), pp. 49-60, Chapman and Hall, London, UK. (PDF)
  • Rayko E., Goursot R., Bernardi G. (1993). Lack of site-specific recombination between mitochondrial genomes of petit mutants of yeast. Gene 132: 167-174. (PDF)
  • Bernardi G. (1993a). The vertebrate genome: isochores and evolution. Mol. Biol. Evol. 10: 186-204. (PDF)
  • Bernardi G. (1992). The vertebrate genome: isochores and evolution. Evoluciòn Biològica 6: 75-102. (PDF)
  • Bettecken T., Aïssani B., Müller C.R., Bernardi G. (1992). Compositional mapping of the human dystrophin-encoding gene. Gene 122: 329-335. (PDF)
  • Matassi G., Melis R., Kuo K.C., Macaya G., Gehrke C.W., Bernardi G. (1992). Large-scale methylation patterns in the nuclear genomes of plants. Gene 122: 239-245. (PDF)
  • de Zamaroczy M. and Bernardi G. (1992). The mosaic organization of the mitochondrial introns of Saccharomyces cerevisiae: features and evolutionary origins. Gene 122: 91-99. (PDF)
  • Zoubak S., Rynditch A., Bernardi G. (1992). Compositional bimodality and evolution of retroviral genomes. Gene 119: 207-213. (PDF)
  • Saccone S., De Sario A., Della Valle G., Bernardi G. (1992). The highest gene concentrations in the human genome are in telomeric bands of metaphase chromosomes. Proc. Natl. Acad. Sci. USA 89: 4913-4917. (PDF)
  • D’Onofrio G. and Bernardi G. (1992). A universal compositional correlation among codon positions. Gene 110: 81-88. (PDF)
  • De Sario A., Aïssani B., Bernardi G. (1991). Compositional properties of telomeric regions from human chromosomes. FEBS Letters 295: 22-26. (PDF)
  • Matassi G., Melis R., Macaya G., Bernardi G. (1991). Compositional bimodality of the nuclear genome of tobacco. Nucleic Acids Res. 19: 5561-5567. (PDF)
  • Rynditch A., Kadi F., Geryk J., Zoubak S., Svoboda J., Bernardi G. (1991). The isopycnic, compartmentalized integration of Rous sarcoma virus sequences. Gene 106: 165-172. (PDF)
  • Aïssani B., Bernardi G. (1991). CpG islands, genes and isochores in the genomes of vertebrates. Gene 106: 185-195. (PDF)
  • Aïssani B., Bernardi G. (1991). CpG islands: features and distribution in the genomes of vertebrates. Gene 106: 173-183. (PDF)
  • Mouchiroud D., D’Onofrio G., Aïssani B., Macaya G., Gautier C., Bernardi G. (1991). The distribution of genes in the human genome. Gene 100: 181-187. (PDF)
  • D’Onofrio G., Mouchiroud D., Aïssani B., Gautier C., Bernardi G. (1991). Correlations between the compositional properties of human genes, codon usage and amino acid composition of proteins. J. Mol. Evol. 32: 504-510. (PDF)
  • Aïssani B., D’Onofrio G., Mouchiroud D., Gardiner K., Gautier C., Bernardi G. (1991). The compositional properties of human genes. J. Mol. Evol. 32: 493-503. (PDF)
  • Bernardi G. and Bernardi G. (1991). Compositional properties of nuclear genes from cold-blooded vertebrates. J. Mol. Evol. 33: 57-67. (PDF)
  • Bernardi G. (1991). The human genome: a view from above. In Boll. Soc. It. Sper. 5: vol. LXVII. Idelson – Napoli. (PDF)
  • Bernardi G. (1991). The human genome project: a plea for basic science. In Prospects in contemporary biology. Impact of science on society. 161:15-25. Unesco Taylor and Francis. (PDF)
  • Bernardi G. (1991). Human genome and its evolutionary origin. In Encyclopedia of Human Biology (R. Dulbecco, ed.) 4: 251-258, Academic Press, New York, USA. (PDF)